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%META:TOPICINFO{author="TemiV" comment="reprev" date="1306970937" format="1.1" reprev="16" version="3"}%

PHYLOWIDGET{"Topic"} -- display phylogeny

  • PHYLOWIDGET macro is used to display a newick formatted tree. The tree could be content of a topic or an attachment on the Foswiki instance. It can also accepts resource hosted on an external url.
  • Syntax:
    %PHYLOWIDGET{"Web.Topic"
       attachment="example.nex"
       url="www.treebase.org/nexus.nex"
       height="800"
       width="600"}%
  • Supported parameters:
Parameter: Description: Default:
"Web.Topic" Topic name whose content is either in nexus format or has an nexus file attachment. -
attachment="example.nex" A nexus formatted file attachment. -
url="www.treebase.org/nexus.nex" Url to an external resource can be included in this parameter. -
height="800" Sets the height of the PhyloWidget applet. -
width="600" Sets the width of the PhyloWidget applet. -
genus Mention the genus of the displayed tree. It is important if the clade information is to be displayed. -
* Examples:
    %PHYLOWIDGET{"%SYSTEMWEB%.PhyloWidgetExample"
    height="495"
    width="420"}%

* Result (if installed):

%PHYLOWIDGET{"System.PhyloWidgetExample" height="495" width="420" useBranchLengths="true" }%

See also: PhyloWidgetPlugin, NEXUSTREES

Topic revision: r3 - 24 Jun 2011, TemiVarghese
 
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